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  • About the Research Analysis Platform
    • About this documentation
    • Frequently asked questions
      • General FAQs
      • 500k WGS FAQs
  • Getting Started
    • Quickstart
      • Creating an account
      • Creating a project
    • Key concepts
    • Data structure
      • Data release versions
      • Updating dispensed data
    • Training videos
      • General
      • Tools
      • Analysis & data types
      • Roundtables
  • Administrator
    • Costs and Billing
    • Managing usage and storage costs
    • Contact support
      • Service packages
  • Working on the Research Analysis Platform
    • Accessing data
      • Accessing phenotype data
      • Accessing bulk data
    • Running analysis jobs
      • Tools library
      • RStudio
      • JupyterLab
      • SAIGE
      • Command-Line Interface
      • Custom app
    • Managing jobs
      • Job Priority
      • Troubleshooting guide
    • Tips & tricks
      • Guide to analyzing large sample sets
    • Returning pVCF Files to UK Biobank
  • Science Corner
    • About the science corner
    • End-to-end target discovery with GWAS and PheWAS
    • Whole Exome Sequencing OQFE Protocol
      • Protocol for Processing UKB Whole Exome Sequencing Data Sets
      • Generation and Utilization of Quality Control Set 90pct10dp on OQFE Data
        • Details on Processing Whole Exome Datasets to Generate the Quality Control Set
    • Burden testing with WES
    • GWAS guide using Alzheimer's disease
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  1. Working on the Research Analysis Platform
  2. Running analysis jobs

Command-Line Interface

These short tutorial videos provide an in-depth guide to accessing and using the Research Analysis Platform via the command-line interface (CLI).

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Last updated 5 months ago

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Introduction
Logging In & Selecting Projects
Working with Files
Searching for Files
Working with Apps