DNAnexus Platform Docs UK Biobank

Data Release Versions

Get full details on data included in each UK Biobank Research Analysis Platform data release.

The Research Analysis Platform holds a copy of all UK Biobank data. All projects are created using this copy.

As UK Biobank updates the data on its end, the copy held by the Research Analysis Platform is periodically updated to reflect these upstream updates. Whenever this happens, this change will be indicated by a new data release version.

How do I select what data I’d like to dispense? This is now part of the project creation process. On the project creation screen, users will now see a new section with the different data types available to dispense. For a faster dispensal time, only select what data you’ll need.

Data release version

Tabular participant data

Bulk Data

Released on the Research Analysis Platform

v18.1

Same as v17.1

This release includes all fields from previous releases, plus these new fields:

24310

Note: As a part of this release, the individual-level data, such as CRAM and VCF files, from the first 200k participant WGS release has been merged into the enduring 500k release fields.

November 30 2023

v17.1

October 2023 Showcase Release

This release includes all fields from previous releases, plus these new fields:

31000, 31001, 31002, 31003, 31004, 31005, 31006, 31007, 31008, 31009, 31010, 31011, 31012, 31013, 31014, 31015, 31016, 31017, 31018, 31019, 31020, 31021, 31022, 31023, 31024, 31025, 31026, 31027, 31028

November 30 2023

v16.1

July 2023 Showcase Release

This release includes all fields from previous releases, plus these new fields:

26301, 24048, 24050, 24051, 24053, 24055, 24056, 24058, 24059, 24061, 24062, 24064, 24065, 20278, 20279.

Note: As part of this release, data were added covering additional participants to the following fields:

20216, 20220, 21011, 21013, 21014, 21012, 21016, 21015, 20222, 20223, 20226, 20211, 20212, 20213, 20214, 20207, 20208, 20209, 20210, 20225, 20217, 20218, 20219, 20224, 20201, 20204, 20202, 20241, 20158, 20260, 20259, 20254, 20205, 20266, 20243, 20264, 20267, 24664, 24662, 24663, 24661, 24665, 24030, 24031, 24032, 24033, 24034, 24035, 24036, 24037, 24038, 24039, 24040, 24041, 24042, 24043, 24044, 24045, 24046, 24047

Note: As a part of this release corrected version of files were issued for fields 23374, 21007 and 21008.

August 2 2023

v15.1

March 2023 Showcase Release

This release includes all fields from previous releases, plus these new fields: 23365, 24305, 24306, 30900

Note: As part of this release, imaging data were added covering additional participants to the following fields: 20216, 20220, 21011, 21013, 21014, 21012, 21016, 21015, 20212, 20213, 20214, 20207, 20208, 20209, 20210, 20225, 20217, 20218, 20219, 20224, 20201, 20204, 20202, 20241, 20158, 20252, 20253, 20249, 20227, 25750, 25752, 25751, 20250, 25753, 20251, 20260, 20259, 20254, 25754, 25755, 20266, 20243, 20264, 20267

April 12 2023

v14.1

November 2022 Showcase Release

This release includes all fields from previous releases, plus these new fields: 23374, 24664, 22300, 24662, 22298, 22299, 24663, 24661,

24665

Note: As part of this release, imaging data were added covering additional participants to the following fields: 20216, 20220, 20222, 20223, 20226, 20211,

20212, 20213, 20214, 20207, 20208, 20209, 20210, 20225, 20217, 20218, 20219, 20224, 20201, 20204, 20202, 20241, 20158, 20260, 20259, 20254, 20205, 20266, 20243, 20264,

20267

v13.1

Same as v12.1

This release includes all fields from previous releases, plus these new fields: 21007 and 21008.

Note: As part of this release, for fields 23372, 23373, 23370, 23371, 23376, 23377, 23383, 23384, 23380, 23379, 23378, 23382, and 23381 data was added for any remaining WGS participants.

Note: As part of this release, for fields 23192, 23193, and 23194, the corrected version of CRAMs/CRAIs/gVCF.tbi files were issued for 95 files.

Note: As part of this release, for fields 23376, 23377, 23378, 23379, 23380, 23382, 23383, and 23384, corrected version of supplemental files were issued.

December 7 2022

v12.1

May 2022 Showcase Release

This release includes all fields from previous releases.

Note: As part of this release, imaging data were added, covering additional participants, to fields 20158, 20201, 20202, 20204, 20205, 20207, 20208, 20209, 20210, 20211, 20212, 20213, 20214, 20216, 20217, 20218, 20219, 20220, 20222, 20223, 20224, 20225,

20226, 20227, 20241, 20243, 20249, 20250, 20251, 20252, 20253, 20254, 20259, 20260, 20263, 20264, 20266, 20267, 25750, 25751, 25752, 25753, 25754, and 25755.

Note: As part of this release, folder names were updated for the following fields: 23157, 23158, and 23159.

June 29 2022

v11.1

February 2022 Showcase Release

This release includes all fields from previous releases, plus these additional fields: 24030, 24031, 23157, 23158, 23159

Note: As part of this release, for fields 23141, 23142, 23143, and 23144, data were added for an additional 20k participants, and data were updated for 51 existing participants.

Note: As part of this release, for fields 23372, 23373, data were added for an additional 20k participants.

Note: As part of this release, for fields 23370, 23371, 23376, 23377, 23378, 23379, 23380, 23381, 23382, 23383, 23384, data were added for an additional 90k participants.

May 25 2022

v10.1

February 2022 Showcase release

This release includes the all fields from previous releases, plus these new fields: 24032, 24033, 24034, 24035, 24036, 24037, 24038, 24039, 24040, 24041, 24042, 24043, 24044, 24045, 24046, 24047, 24304

April 14 2022

v9.1

Same as v6.1

This release includes the all fields from previous releases, plus these new fields:

24066, 24067, 24068, 24069

As part of this release, imaging data were added, covering additional participants, to fields 20158, 20201, 20202, 20204, 20205, 20207, 20208, 20209, 20210, 20211, 20212, 20213, 20214, 20215, 20216, 20217, 20218, 20219, 20220, 20222, 20223, 20224, 20225,

20226, 20227, 20241, 20243, 20249, 20250, 20251, 20252, 20253, 20254, 20259, 20260, 20263, 20264, 20265, 20266, 20267, 21014, 21015, 22002, 25750, 25751, 25752, 25753, 25754, and 25755. WGS data covering additional participants were added to fields 23372 and 23373.

Feb 9 2022

v8.1

Same as v6.1

This release includes all fields from previous releases, with these updates:

As part of this release, for fields 23191, 23193, 23194, 23197, 23346, 23348, 23349, 23350, and 23351, data were added for an additional 50k participants, bringing the total for these fields to 200k participants.

As part of this release, fields 23370, 23371, 23372, 23373, 23376, 23377, 23378, 23379, 23380, 23381, 23382, 23383, 23384, fields were updated to contain data for an additional 200k participants (over and above the 200k participants of fields 23191 etc.) These fields are reserved for the WGS consortium to house data prior to becoming public.

Nov 15 2021

v7.1

Same as v6.1

This release includes all fields from previous releases, plus these additional fields:

23148, 23149, 23150

Note: Starting from this release, FAM files for field 23145 and SAMPLE files for field 23147 contain gender info.

Note: As part of this release, for fields 23141, 23142, 23143, and 23144, data were added for an additional 150k participants, and data were updated for 44 existing participants.

Oct 29 2021

v6.1

August 2021 Showcase release

All fields from previous releases

Sept 22 2021

v5.0

Same as v4.0

This release includes all fields from previous releases, plus these additional fields:

23141, 23142, 23143, 23144, 23145, 23146, 23147, 23370, 23371, 23372, 23373, 23376, 23381, 23383, 23384, 23385, 23386

Sept 3 2021

v4.0

July 2021 Showcase release

This release includes all fields from previous releases, plus these additional fields:

23352, 23353

July 27 2021

v3.0

March 2021 Showcase release

This release includes all fields from v1.0 and v2.0, plus these additional fields, for participants for which there were data, as of March 2021:

6025, 20158, 20201, 20202, 20203, 20204, 20205, 20206, 20207, 20208, 20209, 20210, 20211, 20212, 20213, 20214, 20215, 20216, 20217, 20218, 20219, 20220, 20221, 20222, 20223, 20224, 20225, 20226, 20227, 20241, 20243, 20249, 20250, 20251, 20252, 20253, 20254, 20259, 20260, 20263, 20264, 20265, 20266, 20267, 21011, 21012, 21013, 21014, 21015, 21016, 21017, 21018, 22002, 23181, 23182, 23183, 23184, 25747, 25748, 25749, 25750, 25751, 25752, 25753, 25754, 25755, 90001, 90004

June 4 2021

v2.0

October 2020 Showcase release

This release includes all fields from v1.0, as well as these additional fields:

23156, 23350, 23351

Jan 28 2021

v1.0

October 2020 Showcase release

This release includes only the following fields:

22418, 22419, 22430, 22431, 22437, 22438, 22828, 23151, 23152, 23153, 23154, 23155, 23191, 23192, 23193, 23194, 23195, 23196, 23197, 23198, 23199, 23319, 23345, 23346, 23347, 23348, 23349

Nov 19 2020

About Showcase Releases

Each Showcase release includes both newly released data, and all Showcase data included in previous releases. So the June 2021 Showcase release, for example, includes all data released in all previous Showcase releases, as detailed on the UK Biobank website.

Bulk Fields in the Latest Release

The following table lists all the bulk fields, along with their folders and suffixes, as of the releases (v17.1, v18.1).

This list follows the same order as that in which the subfolders will appear, in projects on the Platform.

Field IDData TypeSubfolderSuffixes

Field ID

Data Type

Subfolder

Suffixes

9000

Acceleration intensity time-series

/Bulk/Activity/Epoch/

.csv

90001

Acceleration data - cwa format

/Bulk/Activity/Raw/

.cwa

20266

Arterial spin labelling brain images - DICOM

/Bulk/Brain MRI/ASL/

.zip

20218

Multiband diffusion brain images - DICOM

/Bulk/Brain MRI/dMRI/

.zip

20250

Multiband diffusion brain images - NIFTI

/Bulk/Brain MRI/dMRI/

.zip

20225

Functional brain images - resting - DICOM

/Bulk/Brain MRI/rfMRI/

.zip

20227

Functional brain images - resting - NIFTI

/Bulk/Brain MRI/rfMRI/

.zip

25750

rfMRI full correlation matrix, dimension 25

/Bulk/Brain MRI/rfMRI/

.txt

25751

rfMRI full correlation matrix, dimension 100

/Bulk/Brain MRI/rfMRI/

.txt

25752

rfMRI partial correlation matrix, dimension 25

/Bulk/Brain MRI/rfMRI/

.txt

25753

rfMRI partial correlation matrix, dimension 100

/Bulk/Brain MRI/rfMRI/

.txt

25754

rfMRI component amplitudes, dimension 25

/Bulk/Brain MRI/rfMRI/

.txt

25755

rfMRI component amplitudes, dimension 100

/Bulk/Brain MRI/rfMRI/

.txt

20215

Scout images for brain scans - DICOM

/Bulk/Brain MRI/Scout/

.zip

20224

Phoenix - DICOM

/Bulk/Brain MRI/Scout/

.zip

20219

Susceptibility weighted brain images - DICOM

/Bulk/Brain MRI/SWI/

.zip

20251

Susceptibility weighted brain images - NIFTI

/Bulk/Brain MRI/SWI/

.zip

20216

T1 structural brain images - DICOM

/Bulk/Brain MRI/T1/

.zip

20252

T1 structural brain images - NIFTI

/Bulk/Brain MRI/T1/

.zip

20263

T1 surface model files and additional structural segmentations

/Bulk/Brain MRI/T1/

.zip

20220

T2 FLAIR structural brain images - DICOM

/Bulk/Brain MRI/T2 FLAIR/

.zip

20221

T2/PD brain images - DICOM

/Bulk/Brain MRI/T2 FLAIR/

.zip

20253

T2 FLAIR structural brain images - NIFTI

/Bulk/Brain MRI/T2 FLAIR/

.zip

20217

Functional brain images - task - DICOM

/Bulk/Brain MRI/tfMRI/

.zip

20249

Functional brain images - task - NIFTI

/Bulk/Brain MRI/tfMRI/

.zip

25747

Eprime advisor file

/Bulk/Brain MRI/tfMRI/

.adv

25748

Eprime txt file

/Bulk/Brain MRI/tfMRI/

.txt

25749

Eprime ed2 file

/Bulk/Brain MRI/tfMRI/

.ed2

22299

Cardiac monitoring phase 1 - Acceleration

/Bulk/Cardiac monitoring phase 1/Acceleration/

.zacl

22300

Cardiac monitoring phase 1 - ECG trace

/Bulk/Cardiac monitoring phase 1/ECG trace/

.zip

22298

Cardiac monitoring phase 1 - Impedance

/Bulk/Cardiac monitoring phase 1/Impedance/

.zimp

24665

Cardiac monitoring phase 2 - Episodic data for specific arrhythmia

/Bulk/Cardiac monitoring phase 2/Episodic data for specific arrhythmia (result file xml)/

.xml

24664

Cardiac monitoring phase 2 - Hourly summary and QT

/Bulk/Cardiac monitoring phase 2/Hourly summary and QT (result file xml)/'

.report

24663

Cardiac monitoring phase 2 - Human-readable analysis report

/Bulk/Cardiac monitoring phase 2/Human-readable analysis report (result file pdf)/

.pdf

24662

Cardiac monitoring phase 2 - Raw ECG data from monitor

/Bulk/Cardiac monitoring phase 2/Raw ECG data from monitor (result file edf)/

.edf

24661

Cardiac monitoring phase 2 - Summary analysis data

/Bulk/Cardiac monitoring phase 2/Summary analysis data (result file csv)/

.csv

20222

Carotid artery ultrasound image (left)

/Bulk/Carotid Ultrasound/Carotid artery (left)/

.zip

20223

Carotid artery ultrasound image (right)

/Bulk/Carotid Ultrasound/Carotid artery (right)/

.zip

20241

Raw carotid device data

/Bulk/Carotid Ultrasound/Raw data/

.zip

20226

Carotid artery ultrasound report

/Bulk/Carotid Ultrasound/Report/

.zip

24030

Whole genome CRAM files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome CRAM files (DRAGEN) [200k]/

dragen.cram

24031

Whole genome CRAM indices (DRAGEN) [200k]

WGS/Whole genome CRAM indices (DRAGEN) [200k]/

dragen.cram.crai

24032

Whole genome supplementary files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome supplementary files (DRAGEN) [200k]/

dragen.sample-level-supplementary.zip

24033

Whole genome variant call files (GVCFs) (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome variant call files (GVCFs) (DRAGEN) [200k]/

dragen.hard-filtered.gvcf.gz

24034

Whole genome variant call files (GVCFs) (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome variant call files (GVCFs) (DRAGEN) [200k]/

dragen.hard-filtered.gvcf.gz.tbi

24035

Whole genome variant call files (GVCFs) (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome variant call files (GVCFs) (DRAGEN) [200k]/

dragen.hard-filtered.vcf.gz

24036

Whole genome variant call files (VCFs) (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome variant call files (VCFs) (DRAGEN) [200k]/

dragen.hard-filtered.vcf.gz.tbi

24037

Whole genome diagnostics files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome diagnostics files (DRAGEN) [200k]/

dragen.diagnostics.zip

24038

Whole genome CNV call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome CNV call files (DRAGEN) [200k]/

dragen.cnv.vcf.gz

24039

Whole genome CNV call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome CNV call files (DRAGEN) [200k]/

dragen.cnv.vcf.gz.tbi

24040

Whole genome CNV supplementary files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome CNV supplementary files (DRAGEN) [200k]/

dragen.cnv-supplementary.zip

24041

Whole genome SV call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome SV call files (DRAGEN) [200k]/

dragen.sv.vcf.gz

24042

Whole genome SV call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome SV call files (DRAGEN) [200k]/

dragen.sv.vcf.gz.tbi

24043

Whole genome SV supplementary files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome SV supplementary files (DRAGEN) [200k]/

dragen.sv-supplementary.zip

24044

Whole genome STR call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome STR call files (DRAGEN) [200k]/

dragen.repeats.vcf.gz

24045

Whole genome STR call files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome STR call files (DRAGEN) [200k]/

dragen.repeats.vcf.gz.tbi

24046

Whole genome STR supplementary files (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome STR supplementary files (DRAGEN) [200k]/

dragen.str-supplementary.zip

24047

Whole genome CYP2D6 genotype calls (DRAGEN) [200k]

/Bulk/DRAGEN WGS/Whole genome CYP2D6 genotype calls (DRAGEN) [200k]/

dragen.cyp2d6.tsv

6025

Fitness test results, including ECG data

/Bulk/Electrocardiogram/Fitness/

.xml

20205

ECG datasets

/Bulk/Electrocardiogram/Resting/

.xml

23143

Exome OQFE CRAM files

/Bulk/Exome sequences/Exome OQFE CRAM files/

.cram

23144

Exome OQFE CRAM indices

/Bulk/Exome sequences/Exome OQFE CRAM files/

.cram.crai

24066

Exome sequences

/Bulk/Exome sequences_Alternative exome processing/Exome variant call files (DRAGEN) (VCFs)/

.vcf.gz

24067

Exome sequences

/Bulk/Exome sequences_Alternative exome processing/Exome variant call files (DRAGEN) (VCFs)/

vcf.gz.tbi

24068

Exome sequences

/Bulk/Exome sequences_Alternative exome processing/Exome variant call files (gnomAD) (VCFs)/

.ukb24068_c10_b0_v1.vcf.gz, ukb24068_c10_b1_v1.vcf.gz...

24068

Exome sequences

/Bulk/Exome sequences_Alternative exome processing/Exome variant call files (gnomAD) (VCFs)/helper_files/

.Broad_455k_exome_gnomAD_QC_summary.md

24069

Exome sequences

/Bulk/Exome sequences_Alternative exome processing/Exome variant call files (gnomAD) (VCFs)/

.ukb24068_c10_b0_v1.vcf.gz.tbi,ukb24068_c10_b1_v1.vcf.gz.tbi

23153

Exome OQFE CRAM files

/Bulk/Exome sequences_Previous exome releases/Exome OQFE CRAM files - interim 200k release/

.cram

23154

Exome OQFE CRAM indices

/Bulk/Exome sequences_Previous exome releases/Exome OQFE CRAM files - interim 200k release/

.cram.crai

23141

Exome OQFE variant call files (VCFs)

/Bulk/Exome sequences/Exome OQFE variant call files (VCFs)/

.g.vcf.gz

23142

Exome OQFE variant call file (VCF) indices

/Bulk/Exome sequences/Exome OQFE variant call files (VCFs)/

.g.vcf.gz.tbi

23151

Exome OQFE variant call files (VCFs)

/Bulk/Exome sequences_Previous exome releases/Exome OQFE variant call files (VCFs) - interim 200k release/

.g.vcf.gz

23152

Exome OQFE variant call file (VCF) indices

/Bulk/Exome sequences_Previous exome releases/Exome OQFE variant call files (VCFs) - interim 200k release/

.g.vcf.gz.tbi

23147

Population level exome OQFE variants, BGEN format - interim 300k release

/Bulk/Exome sequences_Previous exome releases/Population level exome OQFE variants, BGEN format - interim 300k release/

.bgen, .bgi, .sample

23150

Population level exome OQFE variants, BGEN format - interim 450k release

/Bulk/Exome sequences/Population level exome OQFE variants, BGEN format - interim 450k release/

.bgen,

.bgi,

.sample

23159

Population level exome OQFE variants, BGEN format - 500k release

/Bulk/Exome sequences/Population level exome OQFE variants, BGEN format - 500k release/

ukb23159_c1_b0_v1.bgen, ukb23159_c1_b0_v1.bgen.bgi, ukb23159_c1_b0_v1.sample

23155

Population level exome OQFE variants, PLINK format

/Bulk/Exome sequences_Previous exome releases/Population level exome OQFE variants, PLINK format - interim 200k release/

.bed, .bim, .fam

23145

Population level exome OQFE variants, PLINK format - interim 300k release

/Bulk/Exome sequences_Previous exome releases/Population level exome OQFE variants, PLINK format - interim 300k release/

.bed, .bim, .fam, .masks, .txt, .txt.gz

23149

Population level exome OQFE variants, PLINK format - interim 450k release

/Bulk/Exome sequences/Population level exome OQFE variants, PLINK format - interim 450k release/

.bed, .bim, .fam, .masks, .txt, .txt.gz

23158

Population level exome OQFE variants, PLINK format - 500k release

/Bulk/Exome sequences/Population level exome OQFE variants, PLINK format - 500k release/

ukb23158_c1_b0_v1.bed, ukb23158_c1_b0_v1.bim, ukb23158_c1_b0_v1.fam, ...

23158

Population level exome OQFE variants, PLINK format - 500k release helper files

/Bulk/Exome sequences/Population level exome OQFE variants, PLINK format - 500k release/helper_files/

ukb23158_500k_OQFE.sets.txt.gz, ukb23158_500k_OQFE.masks, ukb23158_500k_OQFE.annotations.txt.gz, ukb23158_500k_OQFE.90pct10dp_qc_variants.txt, ukb23158_500k_OQFE.variant_ID_mappings.txt

23157

Population level exome OQFE variants, pVCF format - 500k release

el exome OQFE variants, pVCF format - 500k release/

ukb23158_500k_OQFE.sets.txt.gz, ukb23158_500k_OQFE.masks, ukb23158_500k_OQFE.annotations.txt.gz, ukb23158_500k_OQFE.90pct10dp_qc_variants.txt, ukb23158_500k_OQFE.variant_ID_mappings.txt

23156

Population level exome OQFE variants, pVCF format

/Bulk/Previous exome releases/Population level exome OQFE variants, pVCF format - interim 200k release/

.vcf.gz, .vcf.gz.tbi

23146

Population level exome OQFE variants, pVCF format - interim 300k release

/Bulk/Exome sequences_Previous exome releases/Population level exome OQFE variants, pVCF format - interim 300k release/

.vcf.gz, .vcf.gz.tbi

23148

Population level exome OQFE variants, pVCF format - interim 450k release

/Bulk/Exome sequences/Population level exome OQFE variants, pVCF format - interim 450k release/

.vcf.gz, .vcf.gz.tbi

22002

CEL files

/Bulk/Genotype Results/Genotype CEL files/

.cel

22418

Genotype calls

/Bulk/Genotype Results/Genotype calls/

.bed, .bim, .dat, .fam, .txt

22418

Genotype calls

/Bulk/Genotype Results/Genotype calls/posteriors/

.batch, .bim, .bin

22419

Genotype confidences

/Bulk/Genotype Results/Genotype confidences/

.txt

22431

Genotype copy number variants, log2ratios

/Bulk/Genotype Results/Genotype copy number variants, log2ratios

.txt

22437

Genotype copy number variants B-allele frequencies

/Bulk/Genotype Results/Genotype copy number variants B-allele frequencies/

.txt

22430

Genotype intensities

/Bulk/Genotype Results/Genotype intensities/

.bin

20210

Aortic distensibilty images - DICOM

/Bulk/Heart MRI/Aortic distensibility/

.zip

20213

Blood flow images - DICOM

/Bulk/Heart MRI/Blood flow/

.zip

20211

Cine tagging images - DICOM

/Bulk/Heart MRI/CINE tagging/

.zip

20212

Left ventricular outflow tract images - DICOM

/Bulk/Heart MRI/Left ventricular outflow tract/

.zip

20208

Long axis heart images - DICOM

/Bulk/Heart MRI/Long axis/

.zip

20207

Scout images for heart MRI - DICOM

/Bulk/Heart MRI/Scout/

.zip

20214

Experimental shMOLLI sequence images - DICOM

/Bulk/Heart MRI/ShMOLLI/

.zip

20209

Short axis heart images - DICOM

/Bulk/Heart MRI/Short axis/

.zip

22438

Haplotypes (WTCHG)

/Bulk/Imputation/Haplotypes/

.bgen, .bgi

21008

Imputation from genotype (GEL)

/Bulk/Imputation/Imputation from genotype (GEL)/

ukb21008_c1_b0_v1.bgen, ukb21008_c1_b0_v1.bgen.bgi, 'ukb21008_c1_b0_v1.sample', ...

21008

Imputation from genotype (GEL) helper files

/Bulk/Imputation/Imputation from genotype (GEL)/helper_files/

caution_sites.tsv.gz, ukb21008_c1_b0_v1.bgen.pos, ...

21007

Imputation from genotype (TOPmed)

/Bulk/Imputation/Imputation from genotype (TOPmed)/

ukb21007_c1_b0_v1.bgen, ukb21007_c1_b0_v1.bgen.bgi, ukb21007_c1_b0_v1.sample, ...

21007

Imputation from genotype (TOPmed) helper files

/Bulk/Imputation/Imputation from genotype (TOPmed)/helper_files

ukb21007_c1_b0_v1.sites.vcf.gz, ukb21007_c1_b0_v1.sites.vcf.gz.csi, ...

22828

Imputation from genotype (WTCHG)

/Bulk/Imputation/UKB imputation from genotype/

.bgen, .bgi, .sample, .txt

20264

Kidney Imaging - gradient echo - DICOM

/Bulk/Kidney MRI/Gradient echo/

.zip

20243

Kidney Imaging - T1 ShMOLLI - DICOM

/Bulk/Kidney MRI/ShMOLLI/

.zip

20265

Kidney Imaging - T2 haste - DICOM

/Bulk/Kidney MRI/T2 HASTE/

.zip

20267

Kidney imaging - T2 Vibe - DICOM

/Bulk/Kidney MRI/T2 VIBE/

.zip

20203

Liver images - gradient echo - DICOM

/Bulk/Liver MRI/Gradient echo/

.zip

20254

Liver images - IDEAL protocol - DICOM

/Bulk/Liver MRI/IDEAL/

.zip

20204

Liver Imaging - T1 ShMoLLI - DICOM

/Bulk/Liver MRI/ShMOLLI/

.zip

20260

Pancreas Images - gradient echo - DICOM

/Bulk/Pancreas MRI/Gradient echo/

.zip

20202

Pancreatic fat - DICOM

/Bulk/Pancreas MRI/Pancreatic fat/

.zip

20206

Measurements of pancreas volume - DICOM

/Bulk/Pancreas MRI/Pancreatic volume/

.zip

20259

Pancreas Images - ShMoLLI - DICOM

/Bulk/Pancreas MRI/ShMOLLI/

.zip

30900

Protein biomarkers - Olink helper files

/Bulk/Protein biomarkers/Olink/helper_files/

.pdf, .dat

21011

FDA data file (left)

/Bulk/Retinal Optical Coherence Tomography/FDA (left)/

.fda

21013

FDA data file (right)

/Bulk/Retinal Optical Coherence Tomography/FDA (right)/

.fda

21012

FDS data file (left)

/Bulk/Retinal Optical Coherence Tomography/FDS (left)/

.fds

21014

FDS data file (right)

/Bulk/Retinal Optical Coherence Tomography/FDS (right)/

.fds

21015

Fundus retinal eye image (left)

/Bulk/Retinal Optical Coherence Tomography/Fundus (left)/

.png

21016

Fundus retinal eye image (right)

/Bulk/Retinal Optical Coherence Tomography/Fundus (right)/

.png

21017

OCT image slices (left)

/Bulk/Retinal Optical Coherence Tomography/Slices (left)/

.zip

21018

OCT image slices (right)

/Bulk/Retinal Optical Coherence Tomography/Slices (right)/

.zip

20158

DXA images

/Bulk/Whole Body DXA/DXA/

.zip

20201

Dixon technique for internal fat - DICOM

/Bulk/Whole Body MRI/Dixon/

.zip

23181

BGI WGS CRAM files

/Bulk/Whole genome sequences/BGI WGS CRAM files/

.cram

23182

BGI WGS CRAM indices

/Bulk/Whole genome sequences/BGI WGS CRAM files/

.cram.crai

23197

BQSR - GATK BaseRecalibrator

/Bulk/Whole genome sequences/BQSR - GATK BaseRecalibrator/

.recal_table

23183

Broad WGS CRAM files

/Bulk/Whole genome sequences/Broad WGS CRAM files/

.cram

23184

Broad WGS CRAM indices

/Bulk/Whole genome sequences/Broad WGS CRAM files/

.cram.crai

23347

Concatenated QC Metrics

/Bulk/Whole genome sequences/Concatenated QC Metrics/

.qaqc_metrics

23199

Genotype Concordance - Contingency Metrics

/Bulk/Whole genome sequences/Genotype Concordance - Contingency Metrics/

.genotype_concordance_contingency_metrics

23319

Genotype Concordance - Detail Metrics

/Bulk/Whole genome sequences/Genotype Concordance - Detail Metrics/

.genotype_concordance_detail_metrics

23345

Genotype Concordance - Summary Metrics (Picard)/

/Bulk/Whole genome sequences/Genotype Concordance - Summary Metrics (Picard)/

.genotype_concordance_summary_metrics

23346

Genotype Concordance

/Bulk/Whole genome sequences/Genotype Concordance/

.nrd.stats

23350

Manta-called scored structural variant and indel candidates

/Bulk/Whole genome sequences/Manta-called scored structural variant and indel candidates/

.diploidSV.vcf.gz, .diploidSV.vcf.gz.tbi

23351

Manta-called unscored structural variant and indel candidates

/Bulk/Whole genome sequences/Manta-called unscored structural variant and indel candidates/

.candidateSV.vcf.gz, .candidateSV.vcf.gz.tbi

23365

Microsatellite data generated using a specially optimized tool (popSTR) for microsatellite (STR) marker calling in whole-genome sequencing studies.

/Bulk/Whole genome sequences/Microsatellites - 150k release/

ukb23365_c10_b0_v1.vcf.gz.tbi,

ukb23365_c10_b1_v1.vcf.gz.tbi, ukb23365_c10_b2_v1.vcf.gz.tbi, ukb23365_c9_b2406_v1.vcf.gz.tbi, ukb23365_c9_b2407_v1.vcf.gz.tbi, ukb23365_c9_b2408_v1.vcf.gz.tbi

24306

Population level genome variants, BGEN format - interim 200k release

/Bulk/Whole genome sequences/Population level genome variants, BGEN format - interim 200k release/

ukb24306_c10_b0_v1.bgen, ukb24306_c11_b0_v1.bgen 'ukb24306_c12_b0_v1.bgen, ukb24306_c13_b0_v1.bgen, ukb24306_c14_b0_v1.bgen, ukb24306_c15_b0_v1.bgen, ukb24306_c16_b0_v1.bgen, ukb24306_c17_b0_v1.bgen, ukb24306_c18_b0_v1.bgen, ukb24306_c19_b0_v1.bgen, ukb24306_c1_b0_v1.bgen, ukb24306_c20_b0_v1.bgen, ukb24306_c21_b0_v1.bgen, ukb24306_c22_b0_v1.bgen, ukb24306_c2_b0_v1.bgen, ukb24306_c3_b0_v1.bgen, ukb24306_c4_b0_v1.bgen, ukb24306_c5_b0_v1.bgen, ukb24306_c6_b0_v1.bgen, ukb24306_c7_b0_v1.bgen, ukb24306_c8_b0_v1.bgen, ukb24306_c9_b0_v1.bgen, ukb24306_cX_b0_v1.bgen, ukb24306_c10_b0_v1.sample, ukb24306_c11_b0_v1.sample, ukb24306_c12_b0_v1.sample, ukb24306_c13_b0_v1.sample, ukb24306_c14_b0_v1.sample, ukb24306_c15_b0_v1.sample, ukb24306_c16_b0_v1.sample, ukb24306_c17_b0_v1.sample, ukb24306_c18_b0_v1.sample, ukb24306_c19_b0_v1.sample, ukb24306_c1_b0_v1.sample, ukb24306_c20_b0_v1.sample, ukb24306_c21_b0_v1.sample, ukb24306_c22_b0_v1.sample, ukb24306_c2_b0_v1.sample, ukb24306_c3_b0_v1.sample, ukb24306_c4_b0_v1.sample, ukb24306_c5_b0_v1.sample, ukb24306_c6_b0_v1.sample, ukb24306_c7_b0_v1.sample, ukb24306_c8_b0_v1.sample, ukb24306_c9_b0_v1.sample, ukb24306_cX_b0_v1.sample

24305

Population level WGS variants, PLINK format - interim 200k release

/Bulk/Whole genome sequences/Population level WGS variants, PLINK format - interim 200k release/

ukb24305_c10_b0_v1.bed, ukb24305_c11_b0_v1.bed, ukb24305_c12_b0_v1.bed, ukb24305_c13_b0_v1.bed, ukb24305_c14_b0_v1.bed, ukb24305_c15_b0_v1.bed, ukb24305_c16_b0_v1.bed, ukb24305_c17_b0_v1.bed, ukb24305_c18_b0_v1.bed, ukb24305_c19_b0_v1.bed, ukb24305_c1_b0_v1.bed, ukb24305_c20_b0_v1.bed, ukb24305_c21_b0_v1.bed, ukb24305_c22_b0_v1.bed, ukb24305_c2_b0_v1.bed, ukb24305_c3_b0_v1.bed, ukb24305_c4_b0_v1.bed, ukb24305_c5_b0_v1.bed, ukb24305_c6_b0_v1.bed, ukb24305_c7_b0_v1.bed, ukb24305_c8_b0_v1.bed, ukb24305_c9_b0_v1.bed, ukb24305_cX_b0_v1.bed, ukb24305_c10_b0_v1.bim, ukb24305_c11_b0_v1.bim, ukb24305_c12_b0_v1.bim, ukb24305_c13_b0_v1.bim, ukb24305_c14_b0_v1.bim, ukb24305_c15_b0_v1.bim, ukb24305_c16_b0_v1.bim, ukb24305_c17_b0_v1.bim, ukb24305_c18_b0_v1.bim, ukb24305_c19_b0_v1.bim, ukb24305_c1_b0_v1.bim, ukb24305_c20_b0_v1.bim, ukb24305_c21_b0_v1.bim, ukb24305_c22_b0_v1.bim, ukb24305_c2_b0_v1.bim, ukb24305_c3_b0_v1.bim, ukb24305_c4_b0_v1.bim, ukb24305_c5_b0_v1.bim, ukb24305_c6_b0_v1.bim, ukb24305_c7_b0_v1.bim, ukb24305_c8_b0_v1.bim, ukb24305_c9_b0_v1.bim, ukb24305_cX_b0_v1.bim, ukb24305_c10_b0_v1.fam, ukb24305_c11_b0_v1.fam, ukb24305_c12_b0_v1.fam, ukb24305_c13_b0_v1.fam, ukb24305_c14_b0_v1.fam, ukb24305_c15_b0_v1.fam, ukb24305_c16_b0_v1.fam, ukb24305_c17_b0_v1.fam, ukb24305_c18_b0_v1.fam, ukb24305_c19_b0_v1.fam, ukb24305_c1_b0_v1.fam, ukb24305_c20_b0_v1.fam, ukb24305_c21_b0_v1.fam, ukb24305_c22_b0_v1.fam, ukb24305_c2_b0_v1.fam, ukb24305_c3_b0_v1.fam, ukb24305_c4_b0_v1.fam, ukb24305_c5_b0_v1.fam, ukb24305_c6_b0_v1.fam, ukb24305_c7_b0_v1.fam, ukb24305_c8_b0_v1.fam, ukb24305_c9_b0_v1.fam, ukb24305_cX_b0_v1.fam

24304

Population level WGS variants, pVCF format - interim 200k release

/Bulk/Whole genome sequences/Population level WGS variants, pVCF format - interim 200k release/

ukb24304_c10_b0_v1.vcf.gz.tbi, ukb24304_c10_b1_v1.vcf.gz.tbi, ukb24304_c10_b2_v1.vcf.gz.tbi, ukb24304_cX_b3118_v1.vcf.gz.tbi, ukb24304_cX_b3119_v1.vcf.gz.tbi, ukb24304_cX_b3120_v1.vcf.gz.tbi

23374

Population level WGS variants, pVCF format - 500k release

/Bulk/Whole genome sequences/Population level WGS variants, pVCF format - 500k release/

ukb23374_c10_b0_v1.vcf.gz.tbi, ukb23374_c10_b1_v1.vcf.gz.tbi, ukb23374_c10_b2_v1.vcf.gz.tbi, ukb23374_cX_b7800_v1.vcf.gz.tbi, ukb23374_cX_b7801_v1.vcf.gz.tbi, ukb23374_cX_b7802_v1.vcf.gz.tbi

23198

Sample Contamination (ReadHaps)

/Bulk/Whole genome sequences/Sample Contamination (ReadHaps)/

.contamination

23348

Sample Contamination (verifyBamID) - depthSM

/Bulk/Whole genome sequences/Sample Contamination (verifyBamID) - depthSM/

.verifyBamID.depthSM

23349

Sample Contamination (verifyBamID) - selfSM

/Bulk/Whole genome sequences/Sample Contamination (verifyBamID) - selfSM/

.verifyBamID.selfSM

23193

Whole genome CRAM files

/Bulk/Whole genome sequences/Whole genome CRAM files/

.cram

23372

Whole genome CRAM files (reserved)

/Bulk/Whole genome sequences/Whole genome CRAM files (reserved)/

.cram

23373

Whole genome CRAM indices (reserved)

/Bulk/Whole genome sequences/Whole genome CRAM files (reserved)/

.cram.crai

23194

Whole genome CRAM indices

/Bulk/Whole genome sequences/Whole genome CRAM files/

.cram.crai

23196

Whole genome GATK joint call pVCF

/Bulk/Whole genome sequences/Whole genome GATK joint call pVCF/

.vcf.gz, .vcf.gz.tbi, qc_metrics_gatk_variant_qc.tab.gz, qc_metrics_gatk_variant_qc.tab.gz.tbi, qc_metrics_GATK_version.txt, qc_metrics_README.pdf

23195

Whole genome GraphTyper joint call pVCF (deprecated)

/Bulk/Whole genome sequences/Whole genome GraphTyper joint call pVCF (deprecated)/

.vcf.gz, .vcf.gz.tbi,

qc_metrics_graphtyper_variant_qc.tab.gz,

qc_metrics_graphtyper_variant_qc.tab.gz.tbi,

qc_metrics_README.pdf

23352

Whole genome GraphTyper joint call pVCF

/Bulk/Whole genome sequences/Whole genome GraphTyper joint call pVCF/

.vcf.gz, .vcf.gz.tbi,

qc_metrics_graphtyper_v2.7.1_qc.tab.gz,

qc_metrics_graphtyper_v2.7.1_qc.tab.gz.tbi,

qc_metrics_graphtyper_v2.7.1_README.pdf

23353

Whole genome GraphTyper SV data

/Bulk/Whole genome sequences/Whole genome GraphTyper SV data/

.vcf.gz, .vcf.gz.tbi

23191

Whole genome variant call files (VCFs)

/Bulk/Whole genome sequences/Whole genome variant call files (VCFs)/

.g.vcf.gz

23192

Whole genome variant call files (VCFs)

/Bulk/Whole genome sequences/Whole genome variant call files (VCFs)/

.g.vcf.gz.tbi

23370

Whole genome variant call files (VCFs)

/Bulk/Whole genome sequences/Whole genome variant call files (VCFs) (reserved)/

.g.vcf.gz

23371

Whole genome variant call files (VCFs)

/Bulk/Whole genome sequences/Whole genome variant call files (VCFs) (reserved)/

.g.vcf.gz.tbi

23376

BQSR - GATK BaseRecalibrator

/Bulk/Whole genome sequences/BQSR - GATK BaseRecalibrator (reserved)/

.recal_table

23377

Sample Contamination (ReadHaps)

/Bulk/Whole genome sequences/Sample Contamination (ReadHaps) (reserved)/

.contamination

23378

Genotype Concordance - Contingency Metrics

/Bulk/Whole genome sequences/Genotype Concordance - Contingency Metrics (reserved)/

.genotype_concordance_contingency_metrics

23379

Genotype Concordance - Detail Metrics

/Bulk/Whole genome sequences/Genotype Concordance - Detail Metrics (reserved)/

.genotype_concordance_detail_metrics

23380

Genotype Concordance - Summary Metrics (Picard)

/Bulk/Whole genome sequences/Genotype Concordance - Summary Metrics (Picard) (reserved)/

.genotype_concordance_summary_metrics

23381

Genotype Concordance

/Bulk/Whole genome sequences/Genotype Concordance (reserved)/

.nrd.stats

23382

Concatenated QC Metrics

/Bulk/Whole genome sequences/

Concatenated QC Metrics (reserved)/

.qaqc_metrics

23383

Sample Contamination (verifyBamID) - depthSM

/Bulk/Whole genome sequences/Sample Contamination (verifyBamID) - depthSM (reserved)/

.verifyBamID.depthSM

23384

Sample Contamination (verifyBamID) - selfSM

/Bulk/Whole genome sequences/Sample Contamination (verifyBamID) - selfSM (reserved)/

.verifyBamID.selfSM

23385

Manta-called scored structural variant and indel candidates (Vanguard)

/Bulk/Whole genome sequences/Manta-called scored structural variant and indel candidates (Vanguard)/

.diploidSV.vcf.gz.tbi, .diploidSV.vcf.gz

23386

Manta-called unscored structural variant and indel candidates (Vanguard)

/Bulk/Whole genome sequences/Manta-called unscored structural variant and indel candidates (Vanguard)/

.candidateSV.vcf.gz.tbi, .candidateSV.vcf.gz

24310

DRAGEN population level WGS variants, pVCF format [500k release]

/Bulk/DRAGEN WGS/DRAGEN population level WGS variants, pVCF format [500k release]/chr{1-22,X,Y,M}/

vcf.gz, vcf.gz.tbi

31000

MNI Native Transform

/Bulk/Brain MRI/Native atlases/

zip

31001

Native aparc a2009s dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31002

Native aparc dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31003

Native Glasser dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31004

Native Schaefer7n200p dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31005

Native Schaefer7n500p dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31006

Native Tian Subcortex S1 3T dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31007

Native Tian Subcortex S4 3T dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31008

Native Schaefer7n1000p dMRI

/Bulk/Brain MRI/Native atlases (Diffusion)/

zip

31009

Native aparc a2009s SF

/Bulk/Brain MRI/Native atlases (Structural and functional)/

zip

31010

Native aparc SF

/Bulk/Brain MRI/Native atlases (Structural and functional)/

zip

31011

Native Glasser SF

/Bulk/Brain MRI/Native atlases (Structural and functional)/

zip

31012

Native Schaefer7n100p to 1000p SF

/Bulk/Brain MRI/Native atlases (Structural and functional)/

zip

31013

Native Tian Subcortex S1 to S4 3T

/Bulk/Brain MRI/Native atlases (Structural and functional)/

zip

31014

fMRI timeseries aparc a2009s

/Bulk/Brain MRI/Functional time series/

zip

31015

fMRI timeseries aparc

/Bulk/Brain MRI/Functional time series/

zip

31016

fMRI timeseries Glasser

/Bulk/Brain MRI/Functional time series/

zip

31017

fMRI timeseries global signal

/Bulk/Brain MRI/Functional time series/

zip

31018

fMRI timeseries Schaefer7ns 100p to 1000p

/Bulk/Brain MRI/Functional time series/

zip

31019

fMRI timeseries Tian Subcortex S1 to S4 3T

/Bulk/Brain MRI/Functional time series/

zip

31020

Connectome aparc a2009s and Tian Subcortex S1 3T

/Bulk/Brain MRI/Connectomes/

zip

31021

Connectome aparc and Tian Subcortex S1 3T

/Bulk/Brain MRI/Connectomes/

zip

31022

Connectome Glasser and Tian Subcortex S1 3T

/Bulk/Brain MRI/Connectomes/

zip

31023

Connectome Glasser and Tian Subcortex S4 3T

/Bulk/Brain MRI/Connectomes/

zip

31024

Connectome Schaefer7n1000p and Tian Subcortex S4 3T

/Bulk/Brain MRI/Connectomes/

zip

31025

Connectome Schaefer7n200p and Tian Subcortex S1 3T

/Bulk/Brain MRI/Connectomes/

zip

31026

Connectome Schaefer7n500p and Tian Subcortex S4 3T

/Bulk/Brain MRI/Connectomes/

zip

31027

Tractography endpoints coordinates

/Bulk/Brain MRI/Connectomes/

zip

31028

Tractography quality metrics

/Bulk/Brain MRI/Connectomes/

zip

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