dx find data --property eid=1234567
Bulk
> Genotype Results
> Genotype calls
), and tick the files of interest (for example, <Chromosome 21 file>.bed
, <Chromosome 21 file>.bim
and <Chromosome 21 file>.fam
). Click Select as Input.plink --bfile <Chromosome 21 file> --maf 0.1 --out filtered_chr21
)
/mnt/project
(for example, plink --bfile "/mnt/project/Bulk/<Path to chromosome calls>" --maf 0.1 --out filtered_chr21
statistics.r
), a command to run the script (such as Rscript statistics.r
) , and inside the script you can read any project files by opening them from the /mnt/project
folder (such as fields <- read.csv("/mnt/project/<Path to project files>", sep="\t")
)